Paketti: velvet (1.2.10+dfsg1-8)

[ Source: velvet  ]

Nucleic acid sequence assembler for very short reads

Velvet is a de novo genomic assembler specially designed for short read sequencing technologies, such as Solexa or 454, developed by Daniel Zerbino and Ewan Birney at the European Bioinformatics Institute (EMBL-EBI), near Cambridge, in the United Kingdom.

Velvet currently takes in short read sequences, removes errors then produces high quality unique contigs. It then uses paired read information, if available, to retrieve the repeated areas between contigs.

Tagit: Field: Biology, Bioinformatics, Implemented in: implemented-in::c, interface::commandline, Role: Program, Purpose: Analysing

Muut pakettiin velvet liittyvät paketit

• dep: libc6 (>= 2.34)

  GNU-C-kirjasto: jaetut kirjastot
  myös näennäispaketti, jonka toteuttaa libc6-udeb

• dep: libgomp1 (>= 4.9)

  GCC OpenMP (GOMP) support library

• dep: zlib1g (>= 1:1.2.0.2)

  pakkauskirjaston ajonaikaistiedostot

• sug: velvet-example

  Example data for the Velvet sequence assembler

Imuroi velvet

Imurointi kaikille saataville arkkitehtuureille

Arkkitehtuuri	Paketin koko	Koko asennettuna	Tiedostot
amd64	658.0 kt	1,256.0 kt	[tiedostoluettelo]