Package: proteinortho (6.3.1+dfsg-1 and others)

[ Source: proteinortho  ]

Detection of (Co-)orthologs in large-scale protein analysis

Proteinortho is a stand-alone tool that is geared towards large datasets and makes use of distributed computing techniques when run on multi-core hardware. It implements an extended version of the reciprocal best alignment heuristic. Proteinortho was applied to compute orthologous proteins in the complete set of all 717 eubacterial genomes available at NCBI at the beginning of 2009. Authors succeeded identifying thirty proteins present in 99% of all bacterial proteomes.

Other Packages Related to proteinortho

• dep: diamond-aligner (>= 2.0.10~)

  accelerated BLAST compatible local sequence aligner

• dep: libc6 (>= 2.38)

  Biblioteca de C de GNU: Bibliotecas compartidas
  also a virtual package provided by libc6-udeb

• dep: libgcc-s1 (>= 3.0)

  Biblioteca de ayuda de GCC

• dep: libgomp1 (>= 4.9)

  biblioteca para uso de OpenMP en GCC (GOMP)

• dep: liblapack3

  Library of linear algebra routines 3 - shared version

• dep: libstdc++6 (>= 13.1)

  biblioteca estándar de C++ de GNU v3

• dep: ncbi-blast+

  next generation suite of BLAST sequence search tools

• dep: perl

  Lenguaje Práctico de Extracción e Informe de Larry Wall

• dep: procps

  Herramientas del sistema de ficheros en /proc

• dep: python3

  interactive high-level object-oriented language (default python3 version)

Download proteinortho

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
arm64	6.3.1+dfsg-1+b1	320.8 kB	1,182.0 kB	[list of files]