Package: stacks (2.68+dfsg-2)

[ Source: stacks  ]

pipeline for building loci from short-read DNA sequences

Stacks is a software pipeline for building loci from short-read sequences, such as those generated on the Illumina platform. Stacks was developed to work with restriction enzyme-based data, such as RAD-seq, for the purpose of building genetic maps and conducting population genomics and phylogeography.

Note that this package installs Stacks such that all commands must be run as: $ stacks <cmdname> <args>

Other Packages Related to stacks

• dep: bsdextrautils

  extra utilities from 4.4BSD-Lite

• dep: libc6 (>= 2.38)

  Biblioteca de C de GNU: Bibliotecas compartidas
  also a virtual package provided by libc6-udeb

• dep: libdbi-perl

  Interfaz de base de datos de Perl (DBI)

• dep: libgcc-s1 (>= 3.4.4)

  Biblioteca de ayuda de GCC

• dep: libgomp1 (>= 6)

  biblioteca para uso de OpenMP en GCC (GOMP)

• dep: libhts3t64 (>= 1.17)

  C library for high-throughput sequencing data formats

• dep: libstdc++6 (>= 14)

  biblioteca estándar de C++ de GNU v3

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: samtools

  processing sequence alignments in SAM, BAM and CRAM formats

• dep: zlib1g (>= 1:1.2.6)

  Biblioteca de compresión, ejecutables

• rec: libspreadsheet-writeexcel-perl

  module to create Excel spreadsheets

• rec: littler

  GNU R scripting and command-line front-end -- transition package
  also a virtual package provided by r-cran-littler

• sug: gdb

  El depurador de GNU
  also a virtual package provided by gdb-minimal

Download stacks

Download for all available architectures

Architecture	Package Size	Installed Size	Files
ppc64el	1,170.8 kB	7,109.0 kB	[list of files]