Package: nanopolish (0.14.0-1 and others)

[ Source: nanopolish  ]

consensus caller for nanopore sequencing data

Nanopolish uses a signal-level hidden Markov model for consensus calling of nanopore genome sequencing data. It can perform signal-level analysis of Oxford Nanopore sequencing data. Nanopolish can calculate an improved consensus sequence for a draft genome assembly, detect base modifications, call SNPs and indels with respect to a reference genome and more.

Other Packages Related to nanopolish

• dep: libc6 (>= 2.38)

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• dep: libgcc-s1 (>= 3.3.1)

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• dep: libgomp1 (>= 6)

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• dep: libhdf5-310 (>= 1.14.3)

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• dep: libhts3t64 (>= 1.17)

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• dep: libslow5-0t64 (>= 0.5.1)

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• dep: libstdc++6 (>= 14)

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• dep: libstreamvbyte0 (>= 0.4.1)

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• dep: perl

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• dep: python3

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• dep: zlib1g (>= 1:1.1.4)

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• rec: python3-biopython

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• rec: python3-pysam

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Download nanopolish

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Architecture	Version	Package Size	Installed Size	Files
amd64	0.14.0-1+b3	2,149.9 kB	9,639.0 kB	[list of files]