Package: beagle (220722-1)

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Homepage [faculty.washington.edu]

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Genotype calling, genotype phasing and imputation of ungenotyped markers

Beagle performs genotype calling, genotype phasing, imputation of ungenotyped markers, and identity-by-descent segment detection. Genotypic imputation works on phased haplotypes using a Li and Stephens haplotype frequency model. Beagle also implements the Refined IBD algorithm for detecting homozygosity-by-descent (HBD) and identity-by-descent (IBD) segments.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::java, interface::commandline, Role: Program, Purpose: Analysing

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dep: default-jre

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virtual package provided by default-jre, openjdk-17-jre, openjdk-21-jre
dep: libhtsjdk-java

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sug: beagle-doc

Documentation for Beagle

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Architecture	Package Size	Installed Size	Files
all	352.8 kB	732.0 kB	[list of files]