Package: beagle-doc (241029-1)

Links for beagle-doc

External Resources:

Homepage [faculty.washington.edu]

Similar packages:

bio-eagle
bio-eagle-examples
minimac4
shapeit4-example
shapeit4
r-cran-qtl
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dindel

Documentation for Beagle

Beagle performs genotype calling, genotype phasing, imputation of ungenotyped markers, and identity-by-descent segment detection. Genotypic imputation works on phased haplotypes using a Li and Stephens haplotype frequency model. Beagle also implements the Refined IBD algorithm for detecting homozygosity-by-descent (HBD) and identity-by-descent (IBD) segments.

This package includes the Beagle API javadocs, and examples.

Tags: Role: Documentation

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Genotype calling, genotype phasing and imputation of ungenotyped markers

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