Package: stacks (2.68+dfsg-1)

[ Source: stacks  ]

pipeline for building loci from short-read DNA sequences

Stacks is a software pipeline for building loci from short-read sequences, such as those generated on the Illumina platform. Stacks was developed to work with restriction enzyme-based data, such as RAD-seq, for the purpose of building genetic maps and conducting population genomics and phylogeography.

Note that this package installs Stacks such that all commands must be run as: $ stacks <cmdname> <args>

Other Packages Related to stacks

• dep: bsdextrautils

  extra utilities from 4.4BSD-Lite

• dep: libc6 (>= 2.38)

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

• dep: libdbi-perl

  Perl Database Interface (DBI)

• dep: libgcc-s1 (>= 3.5)

  GCC support library

• dep: libgomp1 (>= 6)

  GCC OpenMP (GOMP) support library

• dep: libhts3t64 (>= 1.17)

  C library for high-throughput sequencing data formats

• dep: libstdc++6 (>= 14)

  GNU Standard C++ Library v3

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: samtools

  processing sequence alignments in SAM, BAM and CRAM formats

• dep: zlib1g (>= 1:1.2.6)

  compression library - runtime

• rec: libspreadsheet-writeexcel-perl

  module to create Excel spreadsheets

• rec: littler

  GNU R scripting and command-line front-end -- transition package
  also a virtual package provided by r-cran-littler

• sug: gdb

  GNU Debugger

Download stacks

Download for all available architectures

Architecture	Package Size	Installed Size	Files
armel	1,021.0 kB	5,341.0 kB	[list of files]