Package: ipig (0.0.r5-4)

[ Source: ipig  ]

integrating PSMs into genome browser visualisations

iPiG targets the integration of peptide spectrum matches (PSMs) from mass spectrometry (MS) peptide identifications into genomic visualisations provided by genome browser such as the UCSC genome browser (http://genome.ucsc.edu/).

iPiG takes PSMs from the MS standard format mzIdentML (*.mzid) or in text format and provides results in genome track formats (BED and GFF3 files), which can be easily imported into genome browsers.

Other Packages Related to ipig

• dep: libcommons-compress-java

  Java API for working with compression and archive formats

• dep: libcommons-net-java

  Apache Commons Net - Java client API for basic Internet protocols

• dep: libjdom1-java

  lightweight and fast library using XML

• dep: libxerces2-java

  Validating XML parser for Java with DOM level 3 support

Download ipig

Download for all available architectures

Architecture	Package Size	Installed Size	Files
armel	160.9 kB	186.0 kB	[list of files]