Package: topp (2.6.0+cleaned1-4 and others)

[ Source: openms  ]

set of programs implementing The OpenMS Proteomic Pipeline

TOPP (the OpenMS proteomic pipeline) is a pipeline for the analysis of HPLC/MS data. It consists of a set of numerous small applications that can be chained together to create analysis pipelines tailored for a specific problem. The applications make use of the libopenms library. Some examples of these applications are :

  - TOPPView: A viewer for mass spectrometry data.
  - TOPPAS: An assistant for GUI-driven TOPP workflow design.
  - DTAExtractor: Extracts spectra of an MS run file to several
    files in DTA format.
  - FileConverter:  Converts between different MS file formats.
  - FileFilter: Extracts or manipulates portions of data from peak,
    feature or consensus feature files.
  - SpectraMerger: Merges spectra from an LC/MS map, either by
    precursor or by RT blocks.
  - BaselineFilter: Removes the baseline from profile spectra using a
    top-hat filter.
  - InternalCalibration: Applies an internal calibration.
  - PTModel: Trains a model for the prediction of proteotypic
    peptides from a training set.
  - RTPredict: Predicts retention times for peptides using a model
    trained by RTModel.
  - ExecutePipeline: Executes workflows created by TOPPAS.

Tags: Interface Toolkit: Qt

Other Packages Related to topp

• dep: libc6 (>= 2.38)

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

• dep: libgcc-s1 (>= 3.0)

  GCC support library

• dep: libgomp1 (>= 6)

  GCC OpenMP (GOMP) support library

• dep: libopenms2.6.0 (= 2.6.0+cleaned1-4+b4)

  library for LC/MS data management and analysis - runtime

• dep: libqt5core5t64 (>= 5.11.3)

  Qt 5 core module

• dep: libqt5gui5t64 (>= 5.11.3)

  Qt 5 GUI module

  or libqt5gui5-gles (>= 5.11.3)

  Qt 5 GUI module — OpenGL ES variant

• dep: libqt5widgets5t64 (>= 5.11.3)

  Qt 5 widgets module

• dep: libstdc++6 (>= 14)

  GNU Standard C++ Library v3

• dep: libxerces-c3.2t64

  validating XML parser library for C++

• dep: openms-common (= 2.6.0+cleaned1-4)

  package for LC/MS data management and analysis - shared data

• sug: openms-doc

  package for LC/MS data management and analysis - documentation

Download topp

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
s390x	2.6.0+cleaned1-4+b4	3,150.9 kB	17,833.0 kB	[list of files]