Package: belvu (4.44.1+dfsg-7.1 and others) [debports]
Links for belvu
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External Resources:
- Homepage [www.sanger.ac.uk]
Similar packages:
multiple sequence alignment viewer and phylogenetic tool
Belvu is a multiple sequence alignment viewer and phylogenetic tool with an extensive set of user-configurable modes to color residues.
* View multiple sequence alignments. * Residues can be coloured by conservation, with user-configurable cutoffs and colours. * Residues can be coloured by residue type (user-configurable). * Colour schemes can be imported or exported. * Swissprot (or PIR) entries can be fetched by double clicking. * The position in the alignment can be easily tracked. * Manual deletion of rows and columns. * Automatic editing of rows and columns based on customisable criteria: - removal of all-gap columns; - removal of all gaps; - removal of redundant sequences; - removal of a column by a user-specified percentage of gaps; - filtering of sequences by percent identity; - removal of sequences by a user-specified percentage of gaps; - removal of partial sequences (those starting or ending with gaps); and - removal of columns by conservation (with user-specified upper/lower cutoffs). * The alignment can be saved in Stockholm, Selex, MSF or FASTA format. * Distance matrices between sequences can be generated using a variety of distance metrics. * Distance matrices can be imported or exported. * Phylogenetic trees can be constructed based on various distance-based tree reconstruction algorithms. * Trees can be saved in New Hampshire format. * Belvu can perform bootstrap phylogenetic reconstruction.
Other Packages Related to belvu
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- dep: libc6 (>= 2.38)
- GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
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- dep: libcairo2 (>= 1.2.4)
- Cairo 2D vector graphics library
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- dep: libcurl4t64 (>= 7.16.2)
- easy-to-use client-side URL transfer library (OpenSSL flavour)
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- dep: libgbtools0t64 (>= 4.44.1+dfsg)
- library for visualising sequence alignments
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- dep: libglib2.0-0t64 (>= 2.22.0)
- GLib library of C routines
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- dep: libgtk2.0-0t64 (>= 2.12.0)
- GTK graphical user interface library - old version
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- dep: libpango-1.0-0 (>= 1.14.0)
- Layout and rendering of internationalized text
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- dep: libstdc++6 (>= 4.1.1)
- GNU Standard C++ Library v3
Download belvu
Architecture | Version | Package Size | Installed Size | Files |
---|---|---|---|---|
ppc64 (unofficial port) | 4.44.1+dfsg-7.1+b1 | 1,037.7 kB | 1,339.0 kB | [list of files] |