Package: perm (0.4.0-8 and others)

[ Source: perm  ]

efficient mapping of short reads with periodic spaced seeds

PerM is a software package which was designed to perform highly efficient genome scale alignments for hundreds of millions of short reads produced by the ABI SOLiD and Illumina sequencing platforms. Today PerM is capable of providing full sensitivity for alignments within 4 mismatches for 50bp SOLID reads and 9 mismatches for 100bp Illumina reads.

Other Packages Related to perm

• dep: libbsd0 (>= 0.0)

  utility functions from BSD systems - shared library

• dep: libc6 (>= 2.29) [hppa, m68k, ppc64, sparc64, x32]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.32) [sh4]

  dep: libc6 (>= 2.34) [amd64, armel, armhf, i386, mips64el, ppc64el, riscv64, s390x]

  dep: libc6 (>= 2.38) [arm64]

• dep: libc6.1 (>= 2.29) [alpha]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6.1-udeb

  dep: libc6.1 (>= 2.32) [ia64]

• dep: libgcc-s1 (>= 3.0) [arm64, ppc64el, s390x]

  GCC support library

  dep: libgcc-s1 (>= 3.4) [not arm64, armel, armhf, hppa, ia64, m68k, ppc64el, s390x]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [ia64]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC support library

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC support library

• dep: libgomp1 (>= 4.9)

  GCC OpenMP (GOMP) support library

• dep: libstdc++6 (>= 13.1) [riscv64]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 14) [arm64]

  dep: libstdc++6 (>= 5.2) [not arm64, riscv64]

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

Download perm

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	0.4.0-8	128.2 kB	413.0 kB	[list of files]
amd64	0.4.0-8+b1	124.4 kB	337.0 kB	[list of files]
arm64	0.4.0-8+b2	114.6 kB	348.0 kB	[list of files]
armel	0.4.0-8+b1	108.0 kB	348.0 kB	[list of files]
armhf	0.4.0-8+b1	111.8 kB	284.0 kB	[list of files]
hppa (unofficial port)	0.4.0-8	131.4 kB	358.0 kB	[list of files]
i386	0.4.0-8+b1	141.8 kB	392.0 kB	[list of files]
ia64 (unofficial port)	0.4.0-8	153.2 kB	652.0 kB	[list of files]
m68k (unofficial port)	0.4.0-8	130.6 kB	371.0 kB	[list of files]
mips64el	0.4.0-8+b1	127.2 kB	502.0 kB	[list of files]
ppc64 (unofficial port)	0.4.0-8	129.6 kB	476.0 kB	[list of files]
ppc64el	0.4.0-8+b1	132.1 kB	477.0 kB	[list of files]
riscv64	0.4.0-8+b1	133.5 kB	292.0 kB	[list of files]
s390x	0.4.0-8+b1	113.2 kB	345.0 kB	[list of files]
sh4 (unofficial port)	0.4.0-8	148.8 kB	344.0 kB	[list of files]
sparc64 (unofficial port)	0.4.0-8	108.2 kB	343.0 kB	[list of files]
x32 (unofficial port)	0.4.0-8	125.4 kB	331.0 kB	[list of files]