Package: pbbamtools (2.4.0+dfsg-1 and others) [debports]

[ Source:  ]

processing Pacific Biosciences binary alignment/map files

The BAM format is a binary, compressed, record-oriented container format for raw or aligned sequence reads. The associated SAM format is a text representation of the same data. The specifications for BAM/SAM are maintained by the SAM/BAM Format Specification Working Group.

PacBio-produced BAM files are fully compatible with the BAM specification, but makes use of the extensibility mechanisms of the BAM specification to encode PacBio-specific information.

This package provides command-line utilities for working with PacBio BAM files.

Other Packages Related to pbbamtools

• dep: libc6.1 (>= 2.37)

  GNU C Library: Shared libraries
  also a virtual package provided by libc6.1-udeb

• dep: libgcc-s1 (>= 4.2)

  GCC support library

• dep: libhts3t64 (>= 1.17)

  C library for high-throughput sequencing data formats

• dep: libpbbam2.4.0 (= 2.4.0+dfsg-1+b3)

  Pacific Biosciences binary alignment/map (BAM) library

• dep: libpbcopper2.3.0 (>= 2.3.0+dfsg)

  data structures, algorithms, and utilities for C++ applications

• dep: libstdc++6 (>= 13.1)

  GNU Standard C++ Library v3

• dep: libunwind8

  library to determine the call-chain of a program - runtime

• rec: samtools

  processing sequence alignments in SAM, BAM and CRAM formats

Download pbbamtools

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
ia64 (unofficial port)	2.4.0+dfsg-1+b3	145.0 kB	712.0 kB	[list of files]