Package: khmer (2.1.2+dfsg-9) [debports]

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in-memory DNA sequence kmer counting, filtering & graph traversal

khmer is a library and suite of command line tools for working with DNA sequence. It is primarily aimed at short-read sequencing data such as that produced by the Illumina platform. khmer takes a k-mer-centric approach to sequence analysis, hence the name.

Other Packages Related to khmer

• dep: cython3 (>= 0.26.1)

  C-Extensions for Python 3

• dep: khmer-common

  common files for the khmer project tools

• dep: libbz2-1.0

  high-quality block-sorting file compressor library - runtime

• dep: libc6.1 (>= 2.31)

  GNU C Library: Shared libraries
  also a virtual package provided by libc6.1-udeb

• dep: libgcc-s1 (>= 4.2)

  GCC support library

• dep: libgomp1 (>= 4.9)

  GCC OpenMP (GOMP) support library

• dep: libstdc++6 (>= 5.2)

  GNU Standard C++ Library v3

• dep: libunwind8

  library to determine the call-chain of a program - runtime

• dep: python3

  interactive high-level object-oriented language (default python3 version)

  dep: python3 (<< 3.10)

  dep: python3 (>= 3.9~)

• dep: python3-bz2file

  Package not available

• dep: python3-screed (>= 1.0)

  short nucleotide read sequence utils in Python 3

• dep: zlib1g (>= 1:1.2.3.4)

  compression library - runtime

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Architecture	Package Size	Installed Size	Files
ia64 (unofficial port)	6,427.6 kB	33,935.0 kB	[list of files]