Package: fastqtl (2.184+v7+dfsg-4 and others) [debports]

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Quantitative Trait Loci (QTL) mapper in cis for molecular phenotypes

The goal of FastQTL is to identify single-nucleotide polymorphisms (SNPs) which are significantly associated with various molecular phenotypes (i.e. expression of known genes, cytosine methylation levels, etc). It performs scans for all possible phenotype-variant pairs in cis (i.e. variants located within a specific window around a phenotype). FastQTL implements a new permutation scheme (Beta approximation) to accurately and rapidly correct for multiple-testing at both the genotype and phenotype levels.

Other Packages Related to fastqtl

• dep: libblas3

  Basic Linear Algebra Reference implementations, shared library

  or libblas.so.3

  virtual package provided by libatlas3-base, libblas3, libblis4-openmp, libblis4-pthread, libblis4-serial, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial

• dep: libboost-iostreams1.83.0 (>= 1.83.0)

  Boost.Iostreams Library

• dep: libboost-program-options1.83.0 (>= 1.83.0)

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• dep: libc6.1 (>= 2.37)

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  also a virtual package provided by libc6.1-udeb

• dep: libgcc-s1 (>= 4.2)

  GCC support library

• dep: libgsl27 (>= 2.7.1)

  GNU Scientific Library (GSL) -- library package

• dep: libhts3t64 (>= 1.17)

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• dep: libstdc++6 (>= 13.1)

  GNU Standard C++ Library v3

• dep: libunwind8

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• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: r-mathlib (>= 4.3.3)

  GNU R standalone mathematics library

• rec: r-cran-argparser

  GNU R command-line argument parser

• rec: r-cran-qvalue

  Package not available

• rec: r-cran-tools

  Package not available

• sug: fastqtl-doc

  QTL mapper in cis for molecular phenotypes - documentation

Download fastqtl

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
ia64 (unofficial port)	2.184+v7+dfsg-4+b2	252.5 kB	1,260.0 kB	[list of files]