Package: tree-puzzle-doc (5.3~rc16+dfsg-12)

[ Source: tree-puzzle  ]

Reconstruction of phylogenetic trees by maximum likelihood (doc)

TREE-PUZZLE (the new name for PUZZLE) is an interactive console program that implements a fast tree search algorithm, quartet puzzling, that allows analysis of large data sets and automatically assigns estimations of support to each internal branch. TREE-PUZZLE also computes pairwise maximum likelihood distances as well as branch lengths for user specified trees. Branch lengths can also be calculated under the clock-assumption. In addition, TREE-PUZZLE offers a novel method, likelihood mapping, to investigate the support of a hypothesized internal branch without computing an overall tree and to visualize the phylogenetic content of a sequence alignment.

This is the documentation package for tree-puzzle

Tags: Field: Biology, Bioinformatics, Made Of: made-of::pdf, role::documentation

Other Packages Related to tree-puzzle-doc

• rec: tree-puzzle

  Reconstruction of phylogenetic trees by maximum likelihood

  or tree-ppuzzle

  Parallelized reconstruction of phylogenetic trees by maximum likelihood

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