Package: ggd-utils (1.0.0+ds-1 and others)

[ Source: ggd-utils  ]

programs for use in ggd

Takes a genome file and (currently) a .vcf.gz or a .bed.gz and checks that:

    * a .tbi is present
    * the VCF has ""##fileformat=VCF" as the first
    line
    * the VCF has a #CHROM header
    * the chromosome are in the order specified by
    the genome file (and present)
    * the positions are sorted
    * the positions are <= the chromosome lengths
    defined in the genome file.

As a result, any new genome going into GGD will have a .genome file that will dictate the sort order and presence or absence of the 'chr' prefix for chromosomes

Other Packages Related to ggd-utils

• dep: libc6 (>= 2.34)

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

Download ggd-utils

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
armel	1.0.0+ds-1+b12	1,798.6 kB	6,035.0 kB	[list of files]