Package: skewer (0.2.2-6) [debports]

[ Source:  ]

post-processing of high-throughput DNA sequence reads

skewer implements the bit-masked k-difference matching algorithm dedicated to the task of adapter trimming and it is specially designed for processing next-generation sequencing (NGS) paired-end sequences.

Features

 * Detection and removal of adapter sequences
 * Insertion and deletion allowed in pattern matching
 * Targeted at Single End, Paired End (PE), and Long Mate Pair (LMP) reads
 * Demultiplexing of barcoded sequencing runs
 * Multi-threading support
 * Trimming based on phred quality scores
 * IUPAC characters for barcodes and adapters
 * Compressed input and output support

Other Packages Related to skewer

• dep: libc6.1 (>= 2.17)

  GNU C Library: Shared libraries
  also a virtual package provided by libc6.1-udeb

• dep: libgcc-s1 (>= 3.0)

  GCC support library

• dep: libstdc++6 (>= 11)

  GNU Standard C++ Library v3

Download skewer

Download for all available architectures

Architecture	Package Size	Installed Size	Files
alpha (unofficial port)	87.6 kB	227.0 kB	[list of files]