Package: r-bioc-decontam (1.24.0+dfsg-1)

[ Source: r-bioc-decontam  ]

identify contaminants in marker-gene and metagenomics sequencing sata

Simple statistical identification of contaminating sequence features in marker-gene or metagenomics data. Works on any kind of feature derived from environmental sequencing data (e.g. ASVs, OTUs, taxonomic groups, MAGs,...). Requires DNA quantitation data or sequenced negative control samples.

Other Packages Related to r-bioc-decontam

• dep: r-api-4.0

  virtual package provided by r-base-core

• dep: r-api-bioc-3.19

  virtual package provided by r-bioc-biocgenerics

• dep: r-cran-ggplot2 (>= 2.1.0)

  implementation of the Grammar of Graphics

• dep: r-cran-reshape2 (>= 1.4.1)

  Flexibly reshape data: a reboot of the reshape package

• sug: r-bioc-biocstyle

  standard styles for vignettes and other Bioconductor documents

• sug: r-bioc-phyloseq

  GNU R handling and analysis of high-throughput microbiome census data

• sug: r-cran-knitr

  GNU R package for dynamic report generation using Literate Programming

• sug: r-cran-rmarkdown

  convert R markdown documents into a variety of formats

Download r-bioc-decontam

Download for all available architectures

Architecture	Package Size	Installed Size	Files
all	205.8 kB	285.0 kB	[list of files]