Package: dnaclust (3-6 and others)

[ Source: dnaclust  ]

tool for clustering millions of short DNA sequences

dnaclust is a tool for clustering large number of short DNA sequences. The clusters are created in such a way that the "radius" of each clusters is no more than the specified threshold.

The input sequences to be clustered should be in Fasta format. The id of each sequence is based on the first word of the seqeunce in the Fasta format. The first word is the prefix of the header up to the first occurrence of white space characters in the header.

Tags: Biology: Fasta/Pearson, Nucleic Acids, Field: field::biology, field::biology:bioinformatics, Implemented in: C++, Role: role::program, works-with::biological-sequence

Other Packages Related to dnaclust

• dep: libboost-program-options1.67.0

  program options library for C++

• dep: libc6 (>= 2.14) [amd64]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.17) [arm64]

  dep: libc6 (>= 2.4) [armhf, i386]

• dep: libgcc1 (>= 1:3.0) [not armhf]

  GCC support library

  dep: libgcc1 (>= 1:3.5) [armhf]

• dep: libstdc++6 (>= 5.2)

  GNU Standard C++ Library v3

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Architecture	Version	Package Size	Installed Size	Files
amd64	3-6+b1	85.5 kB	333.0 kB	[list of files]
arm64	3-6+b1	78.6 kB	309.0 kB	[list of files]
armhf	3-6+b1	71.8 kB	218.0 kB	[list of files]
i386	3-6+b1	88.7 kB	318.0 kB	[list of files]