Package: proteinortho (5.16.b+dfsg-1)

[ Source: proteinortho  ]

Detection of (Co-)orthologs in large-scale protein analysis

Proteinortho is a stand-alone tool that is geared towards large datasets and makes use of distributed computing techniques when run on multi-core hardware. It implements an extended version of the reciprocal best alignment heuristic. Proteinortho was applied to compute orthologous proteins in the complete set of all 717 eubacterial genomes available at NCBI at the beginning of 2009. Authors succeeded identifying thirty proteins present in 99% of all bacterial proteomes.

Other Packages Related to proteinortho

• dep: libc6 (>= 2.17)

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

• dep: libgcc1 (>= 1:3.0)

  GCC support library

• dep: libstdc++6 (>= 5.2)

  GNU Standard C++ Library v3

• dep: ncbi-blast+

  next generation suite of BLAST sequence search tools

• dep: python

  interactive high-level object-oriented language (Python2 version)

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