[ Source: jellyfish ]
Package: jellyfish (2.2.10-2)
Links for jellyfish
Debian Resources:
Download Source Package jellyfish:
Maintainers:
- Debian Med Packaging Team (QA Page, Mail Archive)
- Shaun Jackman (QA Page)
- Andreas Tille (QA Page)
- Michael R. Crusoe (QA Page)
External Resources:
- Homepage [www.cbcb.umd.edu]
Similar packages:
count k-mers in DNA sequences
JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.
JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.
Other Packages Related to jellyfish
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- dep: libc6 (>= 2.17)
- GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
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- dep: libgcc1 (>= 1:3.0)
- GCC support library
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- dep: libjellyfish-2.0-2 (= 2.2.10-2)
- count k-mers in DNA sequences (dynamic library of jellyfish)
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- dep: libstdc++6 (>= 5.2)
- GNU Standard C++ Library v3
Download jellyfish
| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| arm64 | 336.4 kB | 571.0 kB | [list of files] |