Package: ltrsift (1.0.2-8)

[ Source: ltrsift  ]

postprocessing and classification of LTR retrotransposons

LTRsift is a graphical desktop tool for semi-automatic postprocessing of de novo predicted LTR retrotransposon annotations, such as the ones generated by LTRharvest and LTRdigest. Its user-friendly interface displays LTR retrotransposon candidates, their putative families and their internal structure in a hierarchical fashion, allowing the user to "sift" through the sometimes large results of de novo prediction software. It also offers customizable filtering and classification functionality.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c, interface::commandline, User Interface: Graphical User Interface, interface::x11, role::program, Scope: Utility, Interface Toolkit: GTK, Purpose: use::analysing, use::browsing, Comparing, Data Organisation, use::viewing, x11::application

Other Packages Related to ltrsift

• dep: libatk1.0-0 (>= 1.12.4)

  ATK accessibility toolkit

• dep: libc6 (>= 2.7)

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

• dep: libcairo2 (>= 1.2.4)

  Cairo 2D vector graphics library

• dep: libfontconfig1 (>= 2.12.6)

  generic font configuration library - runtime

• dep: libfreetype6 (>= 2.2.1)

  FreeType 2 font engine, shared library files

• dep: libgdk-pixbuf2.0-0 (>= 2.22.0)

  GDK Pixbuf library

• dep: libgenometools0

  versatile genome analysis library

• dep: libglib2.0-0 (>= 2.35.9)

  GLib library of C routines

• dep: libgtk2.0-0 (>= 2.18.0)

  GTK+ graphical user interface library

• dep: libpango-1.0-0 (>= 1.14.0)

  Layout and rendering of internationalized text

• dep: libpangocairo-1.0-0 (>= 1.14.0)

  Layout and rendering of internationalized text

• dep: libpangoft2-1.0-0 (>= 1.14.0)

  Layout and rendering of internationalized text

• rec: last-align

  genome-scale comparison of biological sequences

• rec: ncbi-blast+

  next generation suite of BLAST sequence search tools

Download ltrsift

Download for all available architectures

Architecture	Package Size	Installed Size	Files
amd64	106.7 kB	376.0 kB	[list of files]