Package: t-coffee (13.41.0.28bdc39+dfsg-4)

[ Source: t-coffee  ]

Multiple Sequence Alignment

T-Coffee is a multiple sequence alignment package. Given a set of sequences (Proteins or DNA), T-Coffee generates a multiple sequence alignment. Version 2.00 and higher can mix sequences and structures.

T-Coffee allows the combination of a collection of multiple/pairwise, global or local alignments into a single model. It can also estimate the level of consistency of each position within the new alignment with the rest of the alignments. See the pre-print for more information

T-Coffee has a special called M-Coffee that makes it possible to combine the output of many multiple sequence alignment packages. In its published version, it uses MUSCLE, PROBCONS, POA, DiAlign-TS, MAFFT, Clustal W, PCMA and T-Coffee. A special version has been made for Debian, DM-Coffee, that uses only free software by replacing Clustal W by Kalign. Using the 8 Methods of M-Coffee can sometimes be a bit heavy. You can use a subset of your favorite methods if you prefer.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c, interface::commandline, Role: Program, Scope: Utility, Purpose: use::analysing, use::comparing, Supports Format: Need an extra tag, works-with-format::plaintext, works-with::TODO

Other Packages Related to t-coffee

• dep: libc6 (>= 2.29)

  GNU C Library: Shared libraries
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• dep: libgcc-s1 (>= 3.4.4)

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• dep: libstdc++6 (>= 4.1.1)

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• rec: amap-align

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• rec: clustalo

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• rec: clustalw

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• rec: kalign

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• rec: libxml-simple-perl

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• rec: mafft

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• rec: muscle

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• rec: mustang

  multiple structural alignment of proteins

• rec: ncbi-blast+

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• rec: poa

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• rec: prank

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• rec: probcons

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• rec: proda

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• rec: tm-align

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• sug: boxshade

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• sug: seaview

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• sug: t-coffee-examples

  annotated examples for the use of T-Coffee

Download t-coffee

Download for all available architectures

Architecture	Package Size	Installed Size	Files
ppc64el	1,031.5 kB	3,341.0 kB	[list of files]