Package: murasaki-mpi (1.68.6-12)

[ Source: murasaki  ]

homology detection tool across multiple large genomes (MPI-version)

Murasaki is a scalable and fast, language theory-based homology detection tool across multiple large genomes. It enable whole-genome scale multiple genome global alignments. Supports unlimited length gapped-seed patterns and unique TF-IDF based filtering.

Murasaki is an anchor alignment software, which is

 * exteremely fast (17 CPU hours for whole Human x Mouse genome (with
   40 nodes: 52 wall minutes))
 * scalable (Arbitrarily parallelizable across multiple nodes using MPI.
   Even a single node with 16GB of ram can handle over 1Gbp of sequence.)
 * unlimited pattern length
 * repeat tolerant
 * intelligent noise reduction

This package provides the MPI-enabled binary for murasaki. While this will speed up operation on multi-processor machines it will slow down on a single processor.

Other Packages Related to murasaki-mpi

• dep: libboost-filesystem1.74.0 (>= 1.74.0)

  filesystem operations (portable paths, iteration over directories, etc) in C++

• dep: libboost-iostreams1.74.0 (>= 1.74.0)

  Boost.Iostreams Library

• dep: libboost-regex1.74.0-icu67

  virtual package provided by libboost-regex1.74.0

• dep: libc6 (>= 2.29)

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

• dep: libgcc-s1 (>= 3.0)

  GCC support library

• dep: libopenmpi3 (>= 4.1.0)

  high performance message passing library -- shared library

• dep: libstdc++6 (>= 5.2)

  GNU Standard C++ Library v3

• dep: murasaki-common

  homology detection tool across multiple large genomes (common files)

Download murasaki-mpi

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Architecture	Package Size	Installed Size	Files
mips64el	593.2 kB	5,060.0 kB	[list of files]