Package: mindthegap-examples (2.2.2-2)

[ Source: mindthegap  ]

optional scripts and example resources for mindthegap

Designed to call insertions of any size, whether they are novel or duplicated, homozygous or heterozygous in the donor genome. it takes as input a set of reads and a reference genome. It outputs two sets of FASTA sequences: one is the set of breakpoints of detection insertion sites, the other is the set of assembled insertions for each breakpoint. MindTheGap can also be used as a genome assembly finishing tool. It can fill the gap between a set of input contigs without any a priori on their relative order and orientation. It outputs the results in gfa file. Please note that this package is meant to accommodate the mindthegap package and only acts as example to how this package can be utilised.

Other Packages Related to mindthegap-examples

• dep: bsdextrautils

  extra utilities from 4.4BSD-Lite

  or bsdmainutils (<< 12.1.1~)

  Transitional package for more utilities from FreeBSD

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• rec: mindthegap

  performs detection and assembly of DNA insertion variants in NGS read datasets

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