Package: metastudent (2.0.1-8)

[ Source: metastudent  ]

predictor of Gene Ontology terms from protein sequence

Often, only the sequence of a protein is known, but not its functions. Metastudent will try to predict missing functional annotations through homology searches (BLAST).

All predicted functions correspond to Gene Ontology (GO) terms from the Molecular Function (MFO), the Biological Process (BPO) and the Cellular Component Ontology (CCO) and are associated with a reliability score.

Other Packages Related to metastudent

• dep: default-jre

  Standard Java or Java compatible Runtime

• dep: libfile-chdir-perl

  more sensible way to change directories

• dep: libgo-perl (>= 0.15-3)

  perl modules for GO and other OBO ontologies

• dep: libgraphviz-perl

  Perl interface to the GraphViz graphing tool

• dep: libipc-run-perl

  Perl module for running processes

• dep: metastudent-data (>= 2.0.0)

  predictor of Gene Ontology terms from protein sequence - data files

• dep: ncbi-blast+-legacy

  NCBI Blast legacy call script

• dep: perl

  Larry Wall's Practical Extraction and Report Language

• dep: python3

  interactive high-level object-oriented language (default python3 version)

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Architecture	Package Size	Installed Size	Files
all	5,850.2 kB	94,970.0 kB	[list of files]