Package: python3-presto (0.6.2-1)

[ Source: presto  ]

toolkit for processing B and T cell sequences (Python3 module)

pRESTO is a toolkit for processing raw reads from high-throughput sequencing of B cell and T cell repertoires.

Dramatic improvements in high-throughput sequencing technologies now enable large-scale characterization of lymphocyte repertoires, defined as the collection of trans-membrane antigen-receptor proteins located on the surface of B cells and T cells. The REpertoire Sequencing TOolkit (pRESTO) is composed of a suite of utilities to handle all stages of sequence processing prior to germline segment assignment. pRESTO is designed to handle either single reads or paired-end reads. It includes features for quality control, primer masking, annotation of reads with sequence embedded barcodes, generation of unique molecular identifier (UMI) consensus sequences, assembly of paired-end reads and identification of duplicate sequences. Numerous options for sequence sorting, sampling and conversion operations are also included.

This package provides the presto Python3 module.

Other Packages Related to python3-presto

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-biopython (>= 1.65)

  Python3 library for bioinformatics

• dep: python3-numpy

  Fast array facility to the Python 3 language

• dep: python3-pandas (>= 0.15)

  data structures for "relational" or "labeled" data

• dep: python3-scipy

  scientific tools for Python 3

Download python3-presto

Download for all available architectures

Architecture	Package Size	Installed Size	Files
all	51.2 kB	222.0 kB	[list of files]