Package: libvcflib-tools (1.0.2+dfsg-2)

[ Source: libvcflib  ]

C++ library for parsing and manipulating VCF files (tools)

The Variant Call Format (VCF) is a flat-file, tab-delimited textual format intended to concisely describe reference-indexed variations between individuals. VCF provides a common interchange format for the description of variation in individuals and populations of samples, and has become the defacto standard reporting format for a wide array of genomic variant detectors.

vcflib provides methods to manipulate and interpret sequence variation as it can be described by VCF. It is both:

 * an API for parsing and operating on records of genomic variation as it can
   be described by the VCF format,
 * and a collection of command-line utilities for executing complex
   manipulations on VCF files.

This package contains several tools using the library.

Other Packages Related to libvcflib-tools

• dep: libc6 (>= 2.29)

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

• dep: libdisorder0 (>= 0.0.2)

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• dep: libfastahack0 (>= 0.0+git20160702.bbc645f+dfsg-5~)

  library for indexing and sequence extraction from FASTA files (lib)

• dep: libgcc-s1 (>= 3.0)

  GCC support library

• dep: libsmithwaterman0 (>= 0.0+git20160702.2610e25)

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• dep: libstdc++6 (>= 9)

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• dep: libtabixpp0 (>= 1.0.0)

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• dep: libvcflib1 (>= 1.0.2+dfsg)

  C++ library for parsing and manipulating VCF files

• dep: python3

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• dep: r-base-core

  GNU R core of statistical computation and graphics system

• dep: r-cran-ggplot2

  implementation of the Grammar of Graphics

• dep: r-cran-gridbase

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• dep: r-cran-plyr

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• sug: r-cran-pracma

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