[ Source: cnvkit ]
Package: cnvkit (0.9.8-1)
Links for cnvkit
Debian Resources:
Download Source Package cnvkit:
Maintainers:
- Debian Med Packaging Team (QA Page, Mail Archive)
- Michael R. Crusoe (QA Page)
- Steffen Moeller (QA Page)
- Olivier Sallou (QA Page)
External Resources:
- Homepage [cnvkit.readthedocs.org]
Similar packages:
Copy number variant detection from targeted DNA sequencing
A command-line toolkit and Python library for detecting copy number variants and alterations genome-wide from targeted DNA sequencing. It is designed for use with hybrid capture, including both whole-exome and custom target panels, and short-read sequencing platforms such as Illumina and Ion Torrent.
Other Packages Related to cnvkit
|
|
|
|
-
- dep: python3
- interactive high-level object-oriented language (default python3 version)
-
- dep: python3-biopython
- Python3 library for bioinformatics
-
- dep: python3-matplotlib
- Python based plotting system in a style similar to Matlab (Python 3)
-
- dep: python3-numpy
- Fast array facility to the Python 3 language
-
- dep: python3-pandas
- data structures for "relational" or "labeled" data
-
- dep: python3-pomegranate
- Fast, flexible and easy to use probabilistic modelling
-
- dep: python3-pyfaidx
- efficient random access to fasta subsequences for Python 3
-
- dep: python3-pysam
- interface for the SAM/BAM sequence alignment and mapping format (Python 3)
-
- dep: python3-reportlab
- ReportLab library to create PDF documents using Python3
-
- dep: python3-scipy
- scientific tools for Python 3
-
- dep: python3-sklearn
- Python modules for machine learning and data mining - Python 3
-
- dep: r-bioc-dnacopy
- R package: DNA copy number data analysis
Download cnvkit
| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| arm64 | 15,065.2 kB | 69,059.0 kB | [list of files] |