Package: debichem-analytical-biochemistry (0.0.11)

[ Source: debichem  ]

DebiChem Analytical BioChemistry

This metapackage will install packages which enable you to:

 - load and convert mass spectrometric data files;
 - edit biopolymer sequences;
 - elaborate complex mass spectrometry workflows;
 - perform protein database searches using tandem-ms data;
 - visualize and explore mass spectrometric data;
 - simulate isotopic clusters;
 - implement proteomics workflows.

Other Packages Related to debichem-analytical-biochemistry

• dep: debichem-tasks (= 0.0.11)

  DebiChem tasks for tasksel

• rec: libmstoolkit-tools

  libraries for manipulating mass spectrometry data - tools

• rec: libpwiz-tools

  ProteoWizard command line tools

• rec: lutefisk

  de novo interpretation of peptide CID spectra

• rec: massxpert

  polymer chemistry modelling and mass spectrometry data simulation (runtime)

• rec: minexpert2

  MS^n mass spectrometric data visualization and mining (runtime)

• rec: openms

  package for LC/MS data management and analysis

• rec: python3-pymzml

  mzML mass spectrometric data parsing (Python 3.x)

• rec: r-cran-maldiquant

  GNU R package for quantitative analysis of mass spectrometry data

• rec: r-cran-maldiquantforeign

  GNU R package providing import/export routines for MALDIquant

• rec: r-cran-mixtools

  GNU R tools for analyzing finite mixture models

• rec: r-cran-readbrukerflexdata

  GNU R package to read Bruker Daltonics *flex format files

• rec: r-cran-readmzxmldata

  GNU R package to read mass spectrometry data in mzXML format

• rec: r-other-amsmercury

  efficient calculation of accurate masses and abundances of isotopic peaks

• rec: r-other-curvefdp

  estimation of confidence levels for peptide identifications

• rec: r-other-iwrlars

  least angle regression, lasso, positive lasso and forward stagewise

• rec: r-other-nitpick

  peak identification for mass spectrometry data

• rec: tandem-mass

  mass spectrometry software for protein identification

• rec: toppic

  Top-down proteoform identification and characterization (programs)

• rec: xtpcpp

  C++ version of X!TandemPipeline

• sug: biceps

  Package not available

• sug: libisospec++-dev

  Isotopic fine structure calculator (C++ development files)

• sug: libpwiz-dev

  library to perform proteomics data analyses (devel files)

• sug: libpwizlite-dev

  Library to load mzML/mzXML files (dev files)

• sug: mmass

  Package not available

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