Package: r-bioc-basilisk (1.10.2+ds-4)

[ Source: r-bioc-basilisk  ]

freezing Python dependencies inside Bioconductor packages

Installs a self-contained conda instance that is managed by the R/Bioconductor installation machinery. This aims to provide a consistent Python environment that can be used reliably by Bioconductor packages. Functions are also provided to enable smooth interoperability of multiple Python environments in a single R session.

The parallel installation of multiple versions of the same software is not supported in Debian - that is meant as a feature, not as a bug. Earlier versions of anything that has ever surfaced in Debian can be retrieved via snapshot.debian.org and integrated in a running system via a chroot directory or by creating a container. An increasing number of Python-R-interactions for machine learning however uses basilisk to help quick'n'easy reproducibility between installations.

Other Packages Related to r-bioc-basilisk

• dep: r-api-4.0

  virtual package provided by r-base-core

• dep: r-api-bioc-3.16

  virtual package provided by r-bioc-biocgenerics

• dep: r-base-core (>= 4.2.2.20221110-1)

  GNU R core of statistical computation and graphics system

• dep: r-bioc-basilisk.utils

  Bioconductor basilisk installation utilities

• dep: r-bioc-dir.expiry

  Bioconductor managing expiration for cache directories

• dep: r-cran-reticulate

  R interface to Python modules, classes, and functions

• sug: r-bioc-biocstyle

  standard styles for vignettes and other Bioconductor documents

• sug: r-cran-callr

  Call GNU R from GNU R

• sug: r-cran-knitr

  GNU R package for dynamic report generation using Literate Programming

• sug: r-cran-rmarkdown

  convert R markdown documents into a variety of formats

• sug: r-cran-testthat

  GNU R testsuite

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