[ Source: pyensembl ]
Package: pyensembl (2.2.4+ds-1)
Links for pyensembl
Debian Resources:
Download Source Package pyensembl:
Maintainers:
- Debian Med Packaging Team (QA Page, Mail Archive)
- Steffen Moeller (QA Page)
- Étienne Mollier (QA Page)
External Resources:
- Homepage [github.com]
Similar packages:
installs data from the Ensembl genome database
The Ensembl genome database is an established reference for genomic sequences and their automated annotation. To have this data local has advantages for bulk analyses, e.g. for the mapping of reads from RNA-seq against the latest golden path - or a previous one to compare analyses.
This package provides a reproducible way to insatll this data and thus simplify the automation of respective workflows.
Other Packages Related to pyensembl
|
|
|
|
-
- dep: pylint
- Python 3 code static checker and UML diagram generator
-
- dep: python3
- interactive high-level object-oriented language (default python3 version)
-
- dep: python3-datacache
- helpers for transparently downloading datasets
-
- dep: python3-gtfparse
- parser for gene transfer format (aka GFF2)
-
- dep: python3-memoized-property
- decorator to avoid redundant computation
-
- dep: python3-nose
- test discovery and running for Python3 unittest
-
- dep: python3-serializable
- base class with serialization methods
-
- dep: python3-typechecks
- express constraints on types
Download pyensembl
| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| all | 34.2 kB | 200.0 kB | [list of files] |