Package: libbio-db-hts-perl (3.01-4 and others)

[ Source: libbio-db-hts-perl  ]

Perl interface to the HTS library

HTSlib is an implementation of a unified C library for accessing common file formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call Format), used for high-throughput sequencing data, and is the core library used by samtools and bcftools. HTSlib only depends on zlib. It is known to be compatible with gcc, g++ and clang.

HTSlib implements a generalized BAM (binary SAM) index, with file extension 'csi' (coordinate-sorted index). The HTSlib file reader first looks for the new index and then for the old if the new index is absent.

This package provides a Perl interface to the HTS library.

Other Packages Related to libbio-db-hts-perl

• dep: libbio-perl-perl

  BioPerl core perl modules

• dep: libc6 (>= 2.4)

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

• dep: libhts3 (>= 1.10)

  C library for high-throughput sequencing data formats

• dep: perl (>= 5.36.0-4)

  Larry Wall's Practical Extraction and Report Language

• dep: perlapi-5.36.0

  virtual package provided by perl-base

• dep: zlib1g (>= 1:1.2.3.3)

  compression library - runtime

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Architecture	Version	Package Size	Installed Size	Files
mipsel	3.01-4+b1	143.4 kB	558.0 kB	[list of files]