Package: tiddit (3.5.2+dfsg-1)

[ Source: tiddit  ]

structural variant calling

TIDDIT is a tool to used to identify chromosomal rearrangements using Mate Pair or Paired End sequencing data. TIDDIT identifies intra and inter- chromosomal translocations, deletions, tandem-duplications and inversions, using supplementary alignments as well as discordant pairs.

TIDDIT has two analysis modules. The sv mode, which is used to search for structural variants. And the cov mode that analyse the read depth of a bam file and generates a coverage report.

Other Packages Related to tiddit

• dep: libc6 (>= 2.4)

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

• dep: python3

  interactive high-level object-oriented language (default python3 version)

  dep: python3 (<< 3.12)

  dep: python3 (>= 3.11~)

• dep: python3-joblib

  tools to provide lightweight pipelining in Python

• dep: python3-numpy

  Fast array facility to the Python 3 language

• dep: python3-pysam

  interface for the SAM/BAM sequence alignment and mapping format (Python 3)

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