Package: sibsim4 (0.20-5)

[ Source: sibsim4  ]

align expressed RNA sequences on a DNA template

The SIBsim4 project is based on sim4, which is a program designed to align an expressed DNA sequence with a genomic sequence, allowing for introns. SIBsim4 is a fairly extensive rewrite of the original code with the following goals:

 * speed improvement;
 * allow large, chromosome scale, DNA sequences to be used;
 * provide more detailed output about splice types;
 * provide more detailed output about polyA sites;
 * misc code cleanups and fixes.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c, interface::commandline, Role: Program, Scope: Utility, Purpose: use::TODO, use::comparing, Searching, Supports Format: works-with-format::TODO, works-with-format::plaintext, Works with: Need an extra tag

Other Packages Related to sibsim4

• dep: libc6 (>= 2.4)

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

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Architecture	Package Size	Installed Size	Files
i386	30.8 kB	80.0 kB	[list of files]