Package: python3-cyvcf2 (0.30.18-1 and others)

[ Source: cyvcf2  ]

VCF parser based on htslib (Python 3)

This modules allows fast parsing of VCF and BCF including region-queries with Python. This is essential for efficient analyses of nucleotide variation with Python on high-throughput sequencing data.

cyvcf2 is a cython wrapper around htslib. Attributes like variant.gt_ref_depths return a numpy array directly so they are immediately ready for downstream use.

This package installs the library for Python 3.

Other Packages Related to python3-cyvcf2

• dep: libc6 (>= 2.7)

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

• dep: libhts3 (>= 1.10)

  C library for high-throughput sequencing data formats

• dep: python3

  interactive high-level object-oriented language (default python3 version)

  dep: python3 (<< 3.12)

  dep: python3 (>= 3.11~)

• dep: python3-click

  Wrapper around optparse for command line utilities - Python 3.x

• dep: python3-coloredlogs

  colored terminal output for Python 3's logging module

• dep: python3-numpy (>= 1:1.22.0)

  Fast array facility to the Python 3 language

• dep: python3-numpy-abi9

  virtual package provided by python3-numpy

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Architecture	Version	Package Size	Installed Size	Files
i386	0.30.18-1+b2	782.4 kB	4,726.0 kB	[list of files]