Package: phast (1.6+dfsg-3 and others)

[ Source: phast  ]

phylogenetic analysis with space/time models

PHAST is a software package for comparative and evolutionary genomics. It consists of about half a dozen major programs, plus more than a dozen utilities for manipulating sequence alignments, phylogenetic trees, and genomic annotations. For the most part, PHAST focuses on two kinds of applications: the identification of novel functional elements, including protein-coding exons and evolutionarily conserved sequences; and statistical phylogenetic modeling, including estimation of model parameters, detection of signatures of selection, and reconstruction of ancestral sequences.

PHAST does not support phylogeny reconstruction or sequence alignment, and it is designed for use with DNA sequences only (see Comparison).

Other Packages Related to phast

• dep: libc6 (>= 2.34)

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

• dep: liblapack3

  Library of linear algebra routines 3 - shared version

  or liblapack.so.3

  virtual package provided by libatlas3-base, liblapack3, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial

• dep: libpcre2-8-0 (>= 10.22)

  New Perl Compatible Regular Expression Library- 8 bit runtime files

Download phast

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
i386	1.6+dfsg-3+b1	3,003.7 kB	26,179.0 kB	[list of files]