Package: ncbi-entrez-direct (19.0.20230216+dfsg-2 and others)

[ Source: ncbi-entrez-direct  ]

NCBI Entrez utilities on the command line

Entrez Direct (EDirect) is an advanced method for accessing NCBI's set of interconnected databases (publication, sequence, structure, gene, variation, expression, etc.) from a terminal window or script. Functions take search terms from command-line arguments. Individual operations are combined to build multi-step queries. Record retrieval and formatting normally complete the process.

EDirect also provides an argument-driven function that simplifies the extraction of data from document summaries or other results that are returned in structured XML format. This can eliminate the need for writing custom software to answer ad hoc questions. Queries can move seamlessly between EDirect commands and UNIX utilities or scripts to perform actions that cannot be accomplished entirely within Entrez.

Other Packages Related to ncbi-entrez-direct

• dep: curl

  command line tool for transferring data with URL syntax

  or wget

  retrieves files from the web

• dep: libc6 (>= 2.34)

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

• rec: python3

  interactive high-level object-oriented language (default python3 version)

• sug: curl

  command line tool for transferring data with URL syntax

• sug: libxml-simple-perl

  Perl module for reading and writing XML

• sug: libxml2-utils

  GNOME XML library - utilities

• sug: perl

  Larry Wall's Practical Extraction and Report Language

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Architecture	Version	Package Size	Installed Size	Files
i386	19.0.20230216+dfsg-2+b1	5,257.2 kB	25,260.0 kB	[list of files]