Package: hts-nim-tools (0.2.1-1)

Links for hts-nim-tools

Debian Resources:

Download Source Package hts-nim-tools:

Maintainers:

Debian Med Packaging Team (QA Page, Mail Archive)
Steffen Moeller (QA Page)
Nilesh Patra (QA Page)

External Resources:

Homepage [github.com]

Similar packages:

tools biological sequences: bam-filter, count-reads, vcf-check

This package provides several tools that (at least at the time of their creation) provide functionalities beyond the routine provided by samtools and other reverse dependencies of the htslib.

These new tools are

 • bam-filter : filter BAM/CRAM/SAM files with a simple expression language
 • count-reads: count BAM/CRAM reads in regions given in a BED file
 • vcf-check  : check regions of a VCF against a background for missing chunks

and yes, as the name suggests, these tools are all implemented in nim, using the nim-hts (upstream: hts-nim) wrapper for the htslib.

Other Packages Related to hts-nim-tools

depends

recommends

suggests

enhances

dep: libc6 (>= 2.29)

GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
dep: nim-hts-dev

wrapper for hts C library

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Architecture	Package Size	Installed Size	Files
i386	186.0 kB	843.0 kB	[list of files]