Package: eigensoft (8.0.0+dfsg-1)

[ Source: eigensoft  ]

reduction of population bias for genetic analyses

The EIGENSOFT package combines functionality from the group's population genetics methods (Patterson et al. 2006) and their EIGENSTRAT stratification method (Price et al. 2006). The EIGENSTRAT method uses principal components analysis to explicitly model ancestry differences between cases and controls along continuous axes of variation; the resulting correction is specific to a candidate marker's variation in frequency across ancestral populations, minimizing spurious associations while maximizing power to detect true associations. The EIGENSOFT package has a built-in plotting script and supports multiple file formats and quantitative phenotypes.

Other Packages Related to eigensoft

• dep: libblas3

  Basic Linear Algebra Reference implementations, shared library

  or libblas.so.3

  virtual package provided by libatlas3-base, libblas3, libblis4-openmp, libblis4-pthread, libblis4-serial, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial

• dep: libc6 (>= 2.34)

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

• dep: libgsl27 (>= 2.7.1)

  GNU Scientific Library (GSL) -- library package

• dep: liblapack3

  Library of linear algebra routines 3 - shared version

  or liblapack.so.3

  virtual package provided by libatlas3-base, liblapack3, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial

• dep: liblapacke (>= 3.10.1)

  Library of linear algebra routines 3 - C lib shared version

• dep: perl

  Larry Wall's Practical Extraction and Report Language

• rec: gnuplot

  Command-line driven interactive plotting program.
  also a virtual package provided by gnuplot-nox, gnuplot-qt, gnuplot-x11

Download eigensoft

Download for all available architectures

Architecture	Package Size	Installed Size	Files
amd64	508.0 kB	3,845.0 kB	[list of files]
arm64	465.1 kB	4,385.0 kB	[list of files]
armel	403.7 kB	3,800.0 kB	[list of files]
armhf	389.3 kB	3,096.0 kB	[list of files]
i386	494.7 kB	3,767.0 kB	[list of files]
mips64el	474.5 kB	4,607.0 kB	[list of files]
mipsel	472.1 kB	4,391.0 kB	[list of files]
ppc64el	534.5 kB	5,409.0 kB	[list of files]
s390x	443.4 kB	3,889.0 kB	[list of files]