Package: nanolyse (1.2.0-4)

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remove lambda phage reads from a fastq file

NanoLyse is a tool for rapid removal of contaminant DNA, using the Minimap2 aligner through the mappy Python binding. A typical application would be the removal of the lambda phage control DNA fragment supplied by ONT, for which the reference sequence is included in the package. However, this approach may lead to unwanted loss of reads from regions highly homologous to the lambda phage genome.

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dep: python3

interactive high-level object-oriented language (default python3 version)
dep: python3-biopython

Python3 library for bioinformatics
dep: python3-mappy

Python3 interface minimap2

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Architecture	Package Size	Installed Size	Files
armel	24.7 kB	66.0 kB	[list of files]