Package: bali-phy (3.6.1+dfsg-1)

[ Source: bali-phy  ]

Bayesian Inference of Alignment and Phylogeny

BAli-Phy estimates multiple sequence alignments and evolutionary trees from unaligned DNA, amino acid, or codon sequences. BAli-Phy uses MCMC to estimate evolutionary trees, positive selection, and branch lengths while averaging over alternative alignments. BAli-Phy can display alignment ambiguity graphically in an alignment uncertainty (AU) plot.

BAli-Phy can also estimate phylogenies from a fixed alignment (like MrBayes and BEAST) using substitution models like GTR+gamma. BAli-Phy automatically estimates relative rates for each gene.

Other Packages Related to bali-phy

• dep: libboost-chrono1.74.0 (>= 1.74.0)

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• dep: libboost-filesystem1.74.0 (>= 1.74.0)

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• dep: libboost-program-options1.74.0 (>= 1.74.0)

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• dep: libboost-random1.74.0 (>= 1.74.0)

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• dep: libc6 (>= 2.29)

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• dep: libcairo2 (>= 1.4.10)

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• dep: libgcc-s1 (>= 3.5)

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• dep: libstdc++6 (>= 9)

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• dep: perl

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• dep: python3

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• rec: gnuplot

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• sug: figtree

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• sug: seaview

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Architecture	Package Size	Installed Size	Files
armel	4,569.9 kB	29,779.0 kB	[list of files]