Package: skesa (2.4.0-6 and others)

[ Source: skesa  ]

strategic Kmer extension for scrupulous assemblies

SKESA is a DeBruijn graph-based de-novo assembler designed for assembling reads of microbial genomes sequenced using Illumina. Comparison with SPAdes and MegaHit shows that SKESA produces assemblies that have high sequence quality and contiguity, handles low-level contamination in reads, is fast, and produces an identical assembly for the same input when assembled multiple times with the same or different compute resources. SKESA has been used for assembling over 272,000 read sets in the Sequence Read Archive at NCBI and for real-time pathogen detection.

Other Packages Related to skesa

• dep: libboost-iostreams1.74.0 (>= 1.74.0)

  Boost.Iostreams Library

• dep: libboost-program-options1.74.0 (>= 1.74.0)

  program options library for C++

• dep: libboost-regex1.74.0-icu72

  virtual package provided by libboost-regex1.74.0

• dep: libboost-timer1.74.0 (>= 1.74.0)

  C++ wall clock and CPU process timers

• dep: libc6 (>= 2.34)

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

• dep: libgcc-s1 (>= 3.0)

  GCC support library

• dep: libncbi-vdb3 (>= 3.0.2+dfsg)

  libraries for using data in the INSDC Sequence Read Archives

• dep: libngs-c++3 (>= 3.0.3+dfsg)

  Next Generation Sequencing language Bindings (C++ runtime)

• dep: libstdc++6 (>= 11)

  GNU Standard C++ Library v3

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Architecture	Version	Package Size	Installed Size	Files
arm64	2.4.0-6+b1	426.1 kB	1,908.0 kB	[list of files]