Package: r-cran-dendsort (0.3.4+dfsg-2)

[ Source: r-cran-dendsort  ]

GNU R Modular Leaf Ordering Methods for Dendrogram Nodes

An implementation of functions to optimize ordering of nodes in a dendrogram, without affecting the meaning of the dendrogram. A dendrogram can be sorted based on the average distance of subtrees, or based on the smallest distance value. These sorting methods improve readability and interpretability of tree structure, especially for tasks such as comparison of different distance measures or linkage types and identification of tight clusters and outliers. As a result, it also introduces more meaningful reordering for a coupled heatmap visualization. This method is described in "dendsort: modular leaf ordering methods for dendrogram representations in R", F1000Research 2014, 3: 177 <doi:10.12688/f1000research.4784.1>.

Other Packages Related to r-cran-dendsort

• dep: r-api-4.0

  virtual package provided by r-base-core

• dep: r-base-core (>= 4.2.2.20221110-1)

  GNU R core of statistical computation and graphics system

• sug: r-cran-gplots

  GNU R package with tools for plotting data by Greg Warnes et al

• sug: r-cran-knitr

  GNU R package for dynamic report generation using Literate Programming

• sug: r-cran-rcolorbrewer

  GNU R package providing suitable color palettes

• sug: r-cran-rmarkdown

  convert R markdown documents into a variety of formats

• sug: r-cran-seriation

  GNU R infrastructure for ordering objects using seriation

Download r-cran-dendsort

Download for all available architectures

Architecture	Package Size	Installed Size	Files
all	80.3 kB	137.0 kB	[list of files]