Paket: blixem (4.44.1+dfsg-7.1 und andere)

[ Quellcode: seqtools  ]

interactive browser of sequence alignments

Blixem is an interactive browser of sequence alignments that have been stacked up in a "master-slave" multiple alignment; it is not a 'true' multiple alignment but a 'one-to-many' alignment.

 * Overview section showing the positions of genes and alignments around
   the alignment window
 * Detail section showing the actual alignment of protein or nucleotide
   sequences to the genomic DNA sequence.
 * View alignments against both strands of the reference sequence.
 * View sequences in nucleotide or protein mode; in protein mode, Blixem
   will display the three-frame translation of the reference sequence.
 * Residues are highlighted in different colours depending on whether
   they are an exact match, conserved substitution or mismatch.
 * Gapped alignments are supported, with insertions and deletions being
   highlighted in the match sequence.
 * Matches can be sorted and filtered.
 * SNPs and other variations can be highlighted in the reference
   sequence.
 * Poly(A) tails can be displayed and poly(A) signals highlighted in the
   reference sequence.

Markierungen: GUI-Baukasten: GTK

Andere Pakete mit Bezug zu blixem

• dep: libc6 (>= 2.38)

  GNU-C-Bibliothek: Laufzeitbibliotheken
  auch ein virtuelles Paket, bereitgestellt durch libc6-udeb

• dep: libcairo2 (>= 1.2.4)

  2D-Vektorgrafikbibliothek Cairo

• dep: libcurl4t64 (>= 7.16.2)

  Einfach nutzbare Client-Bibliothek für URL-Übertragungen (OpenSSL-Variante)

• dep: libgbtools0t64 (>= 4.44.1+dfsg)

  library for visualising sequence alignments

• dep: libgcc-s1 (>= 3.0)

  GCC Support-Bibliothek

• dep: libglib2.0-0t64 (>= 2.76.0)

  GLib - Bibliothek von C-Routinen

• dep: libgtk2.0-0t64 (>= 2.14.0)

  GTK - Bibliothek für grafische Benutzeroberflächen - alte Version

• dep: libpango-1.0-0 (>= 1.14.0)

  Gestaltung und Anzeige internationalisierten Textes

• dep: libsqlite3-0 (>= 3.5.9)

  Laufzeit-Bibliothek für SQLite 3

• dep: libstdc++6 (>= 5.2)

  GNU-Implementierung der Standard-C++-Bibliothek (Version 3)

blixem herunterladen

Download für alle verfügbaren Architekturen

Architektur	Version	Paketgröße	Größe (installiert)	Dateien
s390x	4.44.1+dfsg-7.1+b2	1.322,8 kB	2.270,0 kB	[Liste der Dateien]