Paket: spaln (3.0.2+dfsg-2 und andere)

[ Quellcode: spaln  ]

splicing-aware transcript-alignment to genomic DNA

Spaln (space-efficient spliced alignment) is a stand-alone program that maps and aligns a set of cDNA or protein sequences onto a whole genomic sequence in a single job. It also performs spliced or ordinary alignment after rapid similarity search against a protein sequence database, if a genomic segment or an amino acid sequence is given as a query.

spaln supports a combination of protein sequence database and a given genomic segment and performs rapid similarity searches and (semi-)global alignments of a set of protein sequence queries against a protein sequence database. Spaln adopts multi-phase heuristics that makes it possible to perform the job on a conventional personal computer.

Andere Pakete mit Bezug zu spaln

• dep: libc6 (>= 2.38)

  GNU-C-Bibliothek: Laufzeitbibliotheken
  auch ein virtuelles Paket, bereitgestellt durch libc6-udeb

• dep: libgcc-s1 (>= 3.0)

  GCC Support-Bibliothek

• dep: libgsl28 (>= 2.8+dfsg)

  GNU Scientific Library -- Bibliothekspaket

• dep: libstdc++6 (>= 5)

  GNU-Implementierung der Standard-C++-Bibliothek (Version 3)

• dep: spaln-data

  splicing-aware transcript-alignment to genomic DNA (data)

• dep: zlib1g (>= 1:1.2.0.2)

  Kompressions-Bibliothek - Laufzeit

spaln herunterladen

Download für alle verfügbaren Architekturen

Architektur	Version	Paketgröße	Größe (installiert)	Dateien
riscv64	3.0.2+dfsg-2+b1	656,4 kB	3.350,0 kB	[Liste der Dateien]