Paket: flye (2.9.5+dfsg-1)

[ Quellcode: flye  ]

de novo assembler for single molecule sequencing reads using repeat graphs

Flye is a de novo assembler for single molecule sequencing reads, such as those produced by PacBio and Oxford Nanopore Technologies. It is designed for a wide range of datasets, from small bacterial projects to large mammalian-scale assemblies. The package represents a complete pipeline: it takes raw PacBio / ONT reads as input and outputs polished contigs. Flye also has a special mode for metagenome assembly.

Andere Pakete mit Bezug zu flye

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  GNU-C-Bibliothek: Laufzeitbibliotheken
  auch ein virtuelles Paket, bereitgestellt durch libc6-udeb

• dep: libgcc-s1 (>= 3.4)

  GCC Support-Bibliothek

• dep: libstdc++6 (>= 14)

  GNU-Implementierung der Standard-C++-Bibliothek (Version 3)

• dep: minimap2

  versatile pairwise aligner for genomic and spliced nucleotide sequences

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-six

  Python 2 and 3 compatibility library

• dep: samtools

  processing sequence alignments in SAM, BAM and CRAM formats

• dep: zlib1g (>= 1:1.1.4)

  Kompressions-Bibliothek - Laufzeit

flye herunterladen

Download für alle verfügbaren Architekturen

Architektur	Paketgröße	Größe (installiert)	Dateien
riscv64	22.636,1 kB	36.481,0 kB	[Liste der Dateien]