Paket: r-bioc-ucsc.utils (1.0.0+ds-2)

[ Quellcode: r-bioc-ucsc.utils  ]

Low-level utilities to retrieve data from the UCSC Genome

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A set of low-level utilities to retrieve data from the UCSC Genome Browser. Most functions in the package access the data via the UCSC REST API but some of them query the UCSC MySQL server directly. Note that the primary purpose of the package is to support higher-level functionalities implemented in downstream packages like GenomeInfoDb or txdbmaker.

Andere Pakete mit Bezug zu r-bioc-ucsc.utils

• dep: r-api-4.0

  virtuelles Paket, bereitgestellt durch r-base-core

• dep: r-api-bioc-3.19

  virtuelles Paket, bereitgestellt durch r-bioc-biocgenerics

• dep: r-bioc-s4vectors (>= 0.42.1)

  BioConductor S4 implementation of vectors and lists

• dep: r-cran-httr

  GNU R tools for working with URLs and HTTP

• dep: r-cran-jsonlite

  Robust, High Performance JSON Parser and Generator for R

• sug: r-bioc-biocstyle (>= 2.32.1)

  standard styles for vignettes and other Bioconductor documents

• sug: r-bioc-genomeinfodb (>= 1.40.1)

  BioConductor utilities for manipulating chromosome identifiers

• sug: r-cran-dbi

  GNU-R-Paket, stellt eine allgemeine Datenbankschnittstelle bereit

• sug: r-cran-knitr

  GNU R package for dynamic report generation using Literate Programming

• sug: r-cran-rmariadb

  Database Interface and 'MariaDB' Driver

• sug: r-cran-rmarkdown

  Konvertierung von R-Markdown-Dokumenten in verschiedene Formate

• sug: r-cran-testthat

  GNU R testsuite

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