Paket: r-bioc-saturn (1.12.0+dfsg-1)

[ Quellcode: r-bioc-saturn  ]

scalable analysis of differential transcript usage for RNA-sequencing

This Bioconductor package can be used for Scalable Analysis of Differential Transcript Usage for Bulk and Single-Cell RNA-sequencing.

Applications satuRn provides a higly performant and scalable framework for performing differential transcript usage analyses. The package consists of three main functions. The first function, fitDTU, fits quasi-binomial generalized linear models that model transcript usage in different groups of interest. The second function, testDTU, tests for differential usage of transcripts between groups of interest. Finally, plotDTU visualizes the usage profiles of transcripts in groups of interest.

Andere Pakete mit Bezug zu r-bioc-saturn

• dep: r-api-4.0

  virtuelles Paket, bereitgestellt durch r-base-core

• dep: r-api-bioc-3.19

  virtuelles Paket, bereitgestellt durch r-bioc-biocgenerics

• dep: r-bioc-biocparallel (>= 1.38.0)

  BioConductor facilities for parallel evaluation

• dep: r-bioc-limma (>= 3.60.4)

  linear models for microarray data

• dep: r-bioc-summarizedexperiment (>= 1.34.0)

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• dep: r-cran-boot

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• dep: r-cran-ggplot2

  Implementierung der »Grammar of Graphics«

• dep: r-cran-locfdr

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• dep: r-cran-matrix

  GNU R - Paket von Klassen für dicht und dünn besetzte Matrizen

• dep: r-cran-pbapply

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• sug: r-bioc-annotationhub (>= 3.12.0)

  GNU R client to access AnnotationHub resources

• sug: r-bioc-biocstyle (>= 2.32.1)

  standard styles for vignettes and other Bioconductor documents

• sug: r-bioc-delayedarray (>= 0.30.1)

  BioConductor delayed operations on array-like objects

• sug: r-bioc-dexseq (>= 1.50.0)

  GNU R inference of differential exon usage in RNA-Seq

• sug: r-bioc-edger (>= 4.2.1)

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• sug: r-bioc-ensembldb (>= 2.28.0)

  GNU R utilities to create and use an Ensembl based annotation database

• sug: r-cran-covr

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• sug: r-cran-knitr

  GNU R package for dynamic report generation using Literate Programming

• sug: r-cran-rmarkdown

  Konvertierung von R-Markdown-Dokumenten in verschiedene Formate

• sug: r-cran-testthat

  GNU R testsuite

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