Paket: plip (2.3.0+dfsg-2)

[ Quellcode: plip  ]

fully automated protein-ligand interaction profiler

The Protein-Ligand Interaction Profiler (PLIP) is a tool to analyze and visualize protein-ligand interactions in PDB files.

Features include:

 * Detection of eight different types of noncovalent interactions
 * Automatic detection of relevant ligands in a PDB file
 * Direct download of PDB structures from wwPDB server if valid
   PDB ID is given
 * Processing of custom PDB files containing protein-ligand complexes
   (e.g. from docking)
 * No need for special preparation of a PDB file, works out of the box
 * Atom-level interaction reports in rST and XML formats for easy parsing
 * Generation of PyMOL session files (.pse) for each pairing, enabling easy
   preparation of images for publications and talks
 * Rendering of preview image for each ligand and its interactions
   with the protein

Andere Pakete mit Bezug zu plip

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-lxml

  Python-Anbindung für die Bibliotheken libxml2 und libxslt

• dep: python3-numpy

  Fast array facility to the Python language (Python 3)

• dep: python3-openbabel

  Chemical toolbox library (Python bindings)

• rec: pymol

  Grafiksystem für Moleküle

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Architektur	Paketgröße	Größe (installiert)	Dateien
all	81,7 kB	384,0 kB	[Liste der Dateien]